Is the high score circuit only going through the 10K score unit and the 100K relay? It doesn't involve the 1K score unit? That would mean that you can only set replays to be awarded at exact 10K increments, is that right? I only ask because you didn't say anything about checking the 1K score unit circuit board and wiper.
You also didn't say anything about checking the plug board that is used to set the specific replay scores. Have you checked all the jones pins and the sockets on the replay plug board to ensure there is no failed connection there?
The other suggestion I have is to jumper around stuff - for example, jumper around the 10K score unit circuit board, to see if the problem is that the wiper isn't making good contact on the foil side of the board.
- TimMe