Hurricane is pre-fliptronics. How are the leaf switches on the flipper buttons? How about the End of Stroke Switches (normally closed)? Also, check your diodes on the coils.
If not one of those I'd say you have power driver board issues. I'd recommend having it gone through. I just sent one to Clive at Coin Op Cauldron a couple weeks ago for my T2. I was having flipper issues as well. He fixed quite a bit on it. It came back last night. I'll put it in this weekend and let you know if it helped.
Lastly, and I don't know if this could have anything to do with your flippers, but I would replace the ribbon cables just in case. You can get a set (probably 4) from Great Plains Electronics for under $20. I had some reliability and sound issues and my ribbon cables were original (T2 is the same age as Hurricane). I changed the ribbon cables and it was like new again.
If you need help tracking any of this down let me know.