How about Williams using identically-keyed harness connectors - sometimes in the same color too! - in the System 6 era. When bulletins and guides to "which chips / boards / coils did you fry?" have to be made, ya done effed up on the line.
I'd also say the lack of rectifier fuses until System 11 seems like a bad manufacturing decision too, BUT I wonder if maybe they just didn't understand the risk when they designed their electronic platform.
The Bally -35 rectifier board also seems like a horrible manufacturing design too. "Undersized and hard to work on" always fits the "planned obsolescence" ethos. But maybe they lasted as long as "intended".