Radium has mentioned the next step in testing, which you might have already done?
Put machine in switch test, disconnect the plug from the receiver trough opto board.
Use a small piece of wire or solder to connect pin 1 (green-blue) with pin 2 (white-red).
The switch test should respond to this with an activation on switch 62. This verifies that you have a good cpu switch matrix, good wires all the way to the connector.
Have you already done this?
Now, if it DOESN'T register switch 62 being closed, then you know you have a bad wire, or connection somewhere between the cpu and the trough board.
If it DOES register switch 62 (I think maybe you have already tested this?), then the problem is actually in/on the boards at the trough. (Which is what I think is going on).
So, what I do here is to reconnect the plug on the receiver trough board, and unscrew both boards (yes I know it's a pain!).
Get both boards in your hand. Make sure the game is in switch test. With the boards lined up in your hand, one by one, block the opto beam. Each should work except switch 62.
Now, move the transmitter board and align it differently, have LED 7 align with Q2, instead of Q1. Now the receiver opto (Q7) won't be aligned with anything, and Q1 won't align with anything, but the other ones will. Test them by blocking the opto beams.
Now do it the other way, have LED 2 align with Q2, and test them by blocking the opto beams.
This is hard to describe, but easier to do than you'd think. The idea is that you want to have a different transmitter LED from the transmitter board shining on each receiver LED on the receiver board.
We'll come up with a couple of things.
What I suspect is that the receiver associated with Switch 62 won't activate no matter which LED on the transmitter is shining on it. If that is the case, then yes, you have exactly the same problem with a different board. Start by replacing the receiver LED with a QSD124, making sure that the LED is properly installed with the correct leg connected to the C and E sides. (Here is the link:
https://pinside.com/pinball/forum/topic/how-to-determine-the-c-e-of-black-opto-receiver-leds ). If replacing the receiver doesn't fix it, then you are looking at the LM339 chip... I've never seen the resistors or diode be bad.
Another thing that might be the case is that the transmitter that you previously tested as OK that would be shining on the receiver for Switch 62 is now not shining on any receiver that you align it with. That would be great! Check the resistor and it's solder connections that is associated with that LED, and if necessary replace the transmitter LED with a QED123. It is extremely common for the resistors to test with no connection inside them (this is called the resistor being open), or the legs to the resistors be broken on the original transmitter trough board.
Another thing that might happen is that everything works perfectly in your hand, but doesn't work when installed. Sometimes the transmitter LED is bent a little to the side and thus not shining directly on the receiver, but this is usually bad solder connections (at the connector or the transmitter resistor).
Let us know!