It looks like exactly the same issue, right? I would start with the most basic things first. Shutdown the PC and turn everything off. Have a beer. Then power it all back up. The reason I suggest this is because if there is even the outside chance that there is a rouge config someplace in cache someplace, this would weed that out.
If you have the same results, I would shutdown/quit MPF and make a direct terminal connection to the FAST Nano's RGB port, like you did when you resynced the firmware using Tera Term. This time, instead of the 2nd of 4 ports in the list, connected to the 3rd. Connect at 921600 and send the command:
ID:<enter>
This should give back a message:
ID:RGB FP-CPU...
If the first 3 characters are "RGB" you are on the right port.
Now send the command:
RA:990000<enter>
This command turns all the RGB LEDs Red. (you can use any hexadecimal color) This will help us to know if the issue is in wiring. If you see all red, good to go. If you see any LEDs NOT red, then trace it back to the first LED in the chain(s) that is not red, and inspect.
What directly connecting to the FAST Hardware does is take out any potential issues with the MPF configs. I always test my hardware direct before moving on because it is a huge time suck to try and solve something in high-level software that could never be truly solved that way.
Good luck! Report back.
Aaron
FAST Pinball
PS: From a time crunch stand-point, LEDs will be the easiest thing to solve. If you are hung up or want to change gears for a bit, focus on the other areas of the pin and come back to this.