I ran into a similar dilemma and ended up waxing. Be sure to apply a layer of clear paint like this stuff I found:
http://www.amazon.com/gp/product/B0006O523U/ref=as_li_qf_sp_asin_il_tl
In reference to this guide:
http://www.flippers.be/playfield_touchup.html
If you don't apply the clear paint and used a air brush paint like Createx you will find even gentle waxing with the foam pad will lift the exposed paint. Lock all touch ups in with the clear paint and the wax should blend in the "shineyness" after. If possible test in an inconspicuous spot first just in case.