Glad to see you are willing to try!
I'm sure others may have some suggestions, but here is a simple rundown of what I did and would recommend to you.
Start by determining what connectors on your donor harness go where (like to displays, lamp, mpu, etc) and noting where the connector fits (A4J4, A1J1, etc.) On each I used a piece of tape, wrote what it was called and wrapped loose around wire close to connector.
Then I printed the Plug Connectors Diagrams from both the manuals, compared them and highlighted any and all changes, noting what needed to be changed and where wire needed to be moved to (or even added). Your biggest changes will be shortening\moving the aux lamp run and adding the strobe wires, which you can possible re-use some of the cut-off wire. It also appears that FG uses more lamps than BP, so some additional wires will more than likely need to be added.
Using that, I went to work rebuilding the connectors one at a time and made the changes as I went.
Tools and parts needed:
All the proper connectors\pins\crimper (greatplainselectronics.com has everything you need)
You're most likely going to need .156 pins\connectors for displays and aux lamp but you may need some .10 for connectors to lamp\mpu. youtube has some nice videos demonstrating crimping if you've never done it before. Believe me, it's a skill that you will really use to maintain any pinball machine.
I also bought a cheap 'continuity tester' (which is just a light bulb with battery and leads) to make sure that the wire I had at one end was the same one at the other (sometimes just going by color alone will get you into trouble)
The obvious wire cutter, wire stripper, zip-ties, etc.
It's all a bit of a learning process, but when you're done you will really feel great about the whole thing. Any questions, ask away, and I'll try to help.