Last week i bought my TOM and also i had the same issue as mentioned here. Two kinds of humm. One higher pitched from the speakers and a lower more irritating, which indeed as kiwipinhead suggested, came from the transformer.
When you moved the transformer a little when powered on you could hear the hum changing.
So i googled on transformer hum issues and found a post on a Belgium pinball forum from a guy having the same issues with his JM.
He removed the T shaped metal plate which some (and mine) WPC’s have. The transformer is connected to this grounded plate and connected to the cabinet with four bolts.
So when i removed this plate and reconnected the transformer the hum was completely gone!