Quoted from Lermods:
When you open the coin door, the lights above the fuses for high voltage will go out. That is normal. Power is killed to the high voltage circuits. Close coin door and they come back on.
Ahhh, that makes sense, thanks! They were open during code update and then after. So, I played a couple games, the first game was good. After that same thing happened. Lost gi and feature lights, the only lights that were on were flashers. I checked the fuses, all corresponding LEDs were lit. The first thing I noticed after code update was something with the skill shot where sometimes it wouldn't let me change the lane or the lights above the lanes went out completely until the ball went through the pops then they would light again and I could change the lanes. Do you think it could have something to do with the usb stick I am using to upload the code? It's a Sandisk Cruzer Glide 16gb
FWIW I think the F7 fuse may have been out for a while because as soon as I replaced I noticed the magnet in front of the well walker was slinging the ball a lot.