Quoted from Brewchap:This system 6 MPU board was a working board until I pulled IC7 to test on another board. I replaced the 74041N at IC7 and with Pincoder's ROM 1a I should get an alternate flashing of the top and bottom LEDs. Now all that I get is the flash of both lights, then the top light stays on.
Your CPU chip is crashing. Either because it's flakey, or more likely, because one or more of the ROM sockets is bad. Perhaps just a weak solder joint somewhere on the MPU board.. the VMA signal is generated by IC1 whenever it places a Valid Memory Address on the address bus. If it stops doing that then it has crashed.