You said wiring was a mess on this machine so you need to do basic troubleshooting first before jumping stuff with machine on.
Always check wiring from head to the part that doesn't work first. (with machine off) Multi-meter once again in Continuity mode unplug the connector for what you are having problems with either at the interconnect board or even better all the way to the CPU board. Put probe on wire and then other probe on the wire at the part on the playfield and see if you get beep or buzz. Then you know if wiring up to that point is good. You can do this for anything that is not working, lamps, coils, and switches. Check both colors of wires for each feature not working. Super easy and super safe. If you don't get buzz you move your probes closer to the other probe by finding another exposed wire point and checking again. Keep doing this until you get buzz. Now you know from the buzz point to the previous test point you have an issue in the wiring. As an example I had one machine that the problem was the resistor on the interconnect board. So I only got buzz once I put my probes from CPU connector to the input of the interconnect board from the CPU. So I knew the interconnect board had the issue. I do this step first for everything because normally your problems are just disconnects in wires because of failed solder joints are connectors that are bad.
I am getting out of this at this point, but do these steps and you will easily troubleshoot basic wiring issues on your machine. Most times that is your problem because of vibrations you get at the playfield.
This way of testing is also a good habit to get into if you ever want to fix up an old EM machine. There is no transistor to jump so continuity checks are your go to testing for just about everything.