Resolder the header or replace it. The pitch is set via this input and if its missing a bit, the pitch is off.
Easy way to check is to swap the speech processors from one to the other to make sure it's not the speech chip. Flight 2000's speech all is the same pitch, they never vary it. There can be variations on the speech processors themselves, as with any analog circuitry - but swapping it will tell you straight off. Usually when there is garbage in the speech it could be a timing issue, but AFAIK that timing is internal to the speech chip, not something external although I could be wrong about that.
At some point I along with a couple other people are going to come up with a replacement for this card with a wav trigger type setup, because the speech is known for all games that use it at this point, and I'm in the process of documenting all the pitch changes from the 6 or so games that use it currently as well so that corresponding wav files can be created.