Hmm... Looking at your files is seems that it is just an ACK from the boards. I don't see anything standing out that would indicate a color change. It's just the same data over and over again.
In your log, when you say something like "red". Does that comment appear before or after you've switched to red?
Another thing I noticed... If you look at the schematics, they show the board addresses. They look to correspond to the board numbers: 5, 6, and 7 with one having dip switches for setting the address.
One thing that you might want to try is unplugging all but one of the boards in the 485 chain and see how your data changes. That would determine if it is in fact an ACK that you are receiving. (Also try it without any boards plugged in.)
I also don't know why, but I have a hunch that 0x3d 0xdf 0xfd might be an end of transmission signal. Reminds me of the good old 0xDEAD 0xBEEF 0xFEED
I wonder if you could just ask Stern for the protocol? Maybe they would give it out?
Anyway cool thread. I'll try to help out if I can.