First of all get that battery off of the MPU. It's a time bomb. The cheapest replacement would be to use a 4 place AA battery holder and mount it in the backbox. Install a diode in one of the battery compartments.
Battery-Holder-and-Diode (resized).jpg
Another option would be to replace U8 and U13 with NVRAM's.
The rectifier board is repairable but NVRAM.WEEBLY makes a nice kit that easy to assemble and don't cost much more than the parts alone.
https://nvram.weebly.com/new-pcbs.html
Your boot up problem may be with the connectors. I'd suggest you replace all the connectors and headers on all the boards.