Quoted from itsokay:pinballpete come check out the PPM! I am a volunteer/tech there during the week and there is a lot to see! Due to my recent joining of pinside, I cannot update the games shown on the pinmap, but there are only a few differences.
as cornelius said, Musée Mécanique is a must see as well. It is in total tourist trap San Francisco, but the amount of coin operated gizmos there is truly one of a kind. I think there is a Four Seasons, Indiana Jones, and TAF there for sure, there is a Hyperball as well!
That Indiana Jones at Musee Mecanique had some horrible playfield wear when I was there in 2011. I can't imagine what it looks like now. That place is very cool though.
If you are staying in San Francisco and plan to go to the Pacific Pinball museum in Alameda and you are taking the BART and bus to get there, keep in mind...it will be an all day trip. Wife and I didn't realize what a trek it actually was and we were almost caught in Oakland after dark. That is somewhere you don't want to be.