Normally, fuses are supposed to blow before getting to that point and protect boards/displays/transformers from burning up. If you overfuse (ie, install fuses rated higher than they should be) or just jumper blown fuses, then fuses might not blow when there's a problem.
Homepin was developing a replacement transformer, but that doesn't appear to be quite ready yet.
In the mean time, you can search for a used one by checking ebay and/or place a WTB ad here in the Pinside marketplace. You would be looking for the bally E-122-125 transformer, which fortunately, isn't too hard to find. But, that may cost you $100-$250.
It may also be a good idea to replace the rectifier board as well, if it's not in good shape. Those are available here: https://nvram.weebly.com/new-pcbs.html