rufessor - glad to know you are around. I have one of these too and have learned a lot already. If this is the most complicated one out there, then MagicMaco and I should be an EM geniuses soon.
I had a similar issue with the swiper unit yesterday. Magi, if you haven't figured it out already - you adjust the brass wire can manually operate the reset coil and the advance coil at the same time to simulate a reset signal.
I was having an issue where sometimes the left bonus would advance twice. After fiddling around for a long time i determined the rubber on the left stand up was too tight and would close more than once. I evened out the rubber and adjusted the switch.
Now the only issue I have is the top kicker advances the bonus twice, for which either side is activated. This is consistent. I haven't dug into that one yet, but it is probably a switch adjustment too.
This is a very popular game in my basement.