Having the strobing problem myself now. Tried re-seating all the cables as mentioned above but no joy.
Bought a new CAT 5e cable but the plugs are different on the Stern cables (that would explain why the sheathing is removed on the end of the stern cables).
Strobing stops if I pull one of the GI connectors from the board on the bottom. I pulled the spot light GI so game plays normally but I want to get this working.
Unless someone has a better idea than buying another cable off stern I guess that is what I am going to do for now.