System 11's are notorious for being problematic in mylar removal....Some of it has to do with the way the mylar was originally applied. If it was applied in the field by an operator, your chances are better than average of not having any insert loss. If it was applied at the factory where most full PF mylar was applied it can vary greatly. Alot of it has to do with how soon the mylar was applied to the clear coat on the PF. To soon and the mylar/glue cures into the clear and then that's when you get alot of paint loss/insert art loss. I would say you only have about a 20% chance of NO insert art loss. Most system 11's like Pinbot, HS, F14 I've done mylar removal on and ALWAY lost something.
Now, as for the insert decals, there are three varieties.
Inserts with the art printed on the top side (4mil thick) - These you MUST clear over, otherwise the ball will wear the art. You also need to clear to level the insert with the rest of the PF.
Inserts with the art printed on the adhesive side (4mil thick) - Best method but rare to find them. Most of the decals are printed by Jeff at Classic Arcades and he doesn't have the equipment to do this.
Inserts with the art printed on top side with a thin layer of mylar - Jeff and many others started doing these so you don't have to clear. However, you still have the issue with leveling the decal with the rest of the playfield. The best way, IMHO, to do this is to remove the insert. There are plenty of How-To's on doing this with a hair dryer/punch. Use a sanding block and gently sand the insert face to remove old art and to get a flat surface. Apply your decal and then install the insert flush to the PF, such that the decal is level with the playing surface.
Good Luck on whatever you decide.