Had this problem on a couple of games. Check the 'ball jam' opto - it's located between #1 opto in the trough and the shooter lane to detect if there's a ball stuck there. The game is seeing the opto as closed so it keeps kicking balls out to clear the non-existent jam.
In one case is was a bad IR emitter; replaced it and no problem. The other case (and this took me forever to figure out) was a broken wire in the harness around mid-playfield. It was on the same line in the switch matrix as the ball jam opto. Figured that out when there were two other standup targets that weren't registering as well.
Good luck!