The red/yellow hole lights are controlled by a make/break switch on the Alternating relay (A).
The Alternating relay is controlled by a switch on the 00-90 Unit relay (AX).
The AX relay is an 'AS' style 'mini stepper'. Chance are good that it's gummed up and not able to step freely, so may need a rebuild/cleaning/lube. But it's activated by a switch closing on the M relay (so whenever 100 points are scored), or by switch P3E on the Player Unit closing.