Most likely culprit is the hv disconnect switch that is mounted with the coin door open switch. Its purpose is to turn off the 48v to all coils when the door is open. Check with your multimeter if u have voltage before and after it. Just after the transformer is a plug that diverts power to that switch via the harness to the door switch, it then comes back up the harness to another plug right beside the one from the transformer where it then heads right to the backbox.