The resistors on the base of the lamp column drivers get really hot and its pretty normal. Some may be hotter than others because of the duty cycle. They are all normally getting strobed, but it becomes a problem when a column circuit locks on for whatever reason. If a column circuit locks on the resistor will get so hot to the point they desolder themselves and/or burn the board. If all your lamps are working properly and none seem really bright, your columns are probably fine and the heat is normal.
You can look on pinwiki for information about replacing these lamp column drives with a different technology transistor that does require the big current limiting resistors that get hot.