Ahh, ok so I was a little mixed up about the switch matrix having anything to do with this issue. What you verified is that the *scoring* switches (which are on the switch matrix) all have good continuity up to the driver board.
The skirt switches that activate the pops go to a different connector though, and hopefully that's where the problem might be. Looking at the schematic, it's connector 1J18 that each pop bumper skirt switch goes to. Also take a close look at the capacitor and resistor on each pop bumper activation switch stack, it's possible they got mangled or could be shorting somewhere. They may have been cut off at some point if they aren't there.
Inkedspace shuttle pop bumper switches_LI (resized).jpg
Another thing I noticed looking at the schematic (page 17), there's actually 2 connectors that the wiring for those switches are going through: they end at 1J18, but before they get there, they go through what appears to be a 36-pin connector called 8J3 and 8P3...the right blue arrow is pointing to that connector...it's likely one of the connector blocks between the cabinet and backbox. Did you remove the head when you moved the game? If so, it's possible there's a loose or broken connection(s) at the block those wires go through. I know those block-style connectors can be difficult to separate for removing the head, and it wouldn't surprise me if the wires sometimes get pulled on (weakening or breaking the connection) in attempt to unplug the connector. All 6 special solenoid switches have an orange wire with a colored stripe, so it may not be too hard to track down which block contains them.
Test continuity for the orange wire coming from each non-working pop bumper's activation switch up to 1J18 at the driver board. The Orange/Black wire from the left pop bumper activation switch up to 1J18, pin 2 and the Orange/Green from the right pop bumper activation switch up to 1J18, pin 8. If either is open, I'd start getting a closer look at the connector block 8J3 (though it's probably not labeled anywhere in the game, so follow the orange wires) and the connector at 1J18, male and female sides.