I doubt its in the stepper it basically cannot be, thats not how the jones plug switch could ever work to make rhat change. The stepper sends a signal through every contact at every rotation. Its whoch contact and which switch closure on another ray that determines this. You need to go find where in the schematic the jones plug program to advance one two or three is actually executed. You also need to look hard at the jones and make sure wires and contacts look good.
Always remember to interpret others advice through your own experience and the manual and schematic. I own and have extensively restored this game so I am posting because I think your looking up the wrong tree... but I did not go through schematic so i could be wrong. Just FYI.