Rolf PM'd me about this, and it looks like you figured it out!
But anyway........
I think your stepper isn't set up right.
I had the same problem.
In it's home position, all the way ccw, the contacts should be on the last two rivets, making contact.
in it's extreme position cw, the contacts will be off the rivets, and the limit contacts (the leaf contacts)
should be made.
As you stated above!
Are you having any problems with it scoring too many points?
https://pinside.com/pinball/forum/topic/target-alpha-bonus-counts-too-much
My machine has been a real bitch so far.
Eric