So I've been trouble shooting this and have made progress!
The problem was (and still is) that the score motor runs continuously and lights flash on the playfield.
However, I've discovered that if I trigger the Q relay manually so it latches, the scores reset, the game starts and runs perfectly. However on pressing play to start a new game the same happens again. Kick the Q relay and we're off fine again.
Anyone give me some clues as to some likely causes and where to start checking? Thanks!