Welcome, nice choice for first pinball. Let's give you a few first pointers and a few links....
The 5 "bomb dropping" noises and the ding are OK. If the display was working, you'd be seeing an error message about Factory Settings being restored, which is because the batteries are missing. The correct action then is to press the button in the coin door, which resets things and lets you continue. If the batteries were in place, you'd only get that first time around.
So - yes, the machine will run without batteries, but you'll need to get through the factory settings message each time before you can play.
The 5 flashes you originally were telling you that U41 was bad (probably from the battery corrosion looking at the picture), so nice job replacing it. Continuous flashing is what it should do if it's running properly.
For the power supply, as usual check the fuses. The power supply board is the one top right inside the backbox, check all the fuses there. It's not uncommon for the high voltage section for the display to blow on an old machine, so if you replace a fuse and it blows again it'll need some more looking at.
Some more resources which you'll find invaluable.....
IPDB (internet pinball database). The F-14 page is here, you can download a copy of the manual with schematics if you don't have one already.....
http://ipdb.org/machine.cgi?id=804
Pinwiki. This is a constantly growing collection of information on repairing and maintaining pinball. This is the link to the section relevant for F14 (which is a "system 11" pinball).
http://www.pinwiki.com/wiki/index.php?title=Williams_System_9_-_11
Pinrepair. This was originally "the" place to go for repair information. The site was taken down a few years back as the information was getting outdated, and also because pinwiki was up and coming. There are a few mirrors kicking around though, this is one of them. Some links are possibly broken, but still worth nosing around.
http://techniek.flipperwinkel.nl/wms11/index1.html
Feel free to post away with more questions, we're a friendly bunch (mostly!)
Mark