I'm not sure. You're asking for suggestions. Here's the thought process / logic.
You've said that the lower right flipper functions correctly but the upper right flipper does not. This would suggest that the problem is between the lower right and upper right flipper. The power for the upper right flipper comes from the lower right flipper but only when the stacked (ganged) switch closes (the EOS opens and closes the stacked switch). The power wire goes to the upper playfield through the interconnect board at the back of the lower playfield. Return from the flipper comes back out through the same board.
I don't know how continuity measures through crack/cold joints. When I spot them I usually fix them.
It can't hurt to check the board.