Those holes normally get wood screws, my guess is that a previous owner over-tightened and stripped the holes, then drilled through the playfield to fix his mistake.
BTW I'm in the midst of an Earthshaker shop right now too, and one thing that really bugged me was all those deformed black plastic spacers everywhere. I bought a bunch of similar ones from Marco with a narrower hole for the bolt, less likely to deform that way. They're 2 7/16" long so you'll have to cut them to fit, but each should yield two shorter ones.