Quoted from KenLayton:On connector J4 pin 7 of the mpu board is the flipper disable/enable signal. Commonly corroded from battery damage and can cause nagging intermittent flipper enable problems.
yep, this! super common reason for no flippers and what I was going to post about.
Driver board is commonly a single sided PCB with no plated holes which seems to get cracked solder joints faster. The flipper enable goes to driver J4, so check there too.