Well, going to start from the beginning because the DMD not displaying is the last issue that has happened.
After playing ST:TNG for about 3 hours the left and right inlane eddy sensors started functioning intermittently, after another hour they stopped working completely. This had been happening on the machine since I got it, but it didn't happen all the time so I just let it go. After 6 hours the sound cut completely out and I turned it off for the night. The following morning I booted it back up and the sound worked just fine, I pulled out and examined the sound board and it looks just great.
A couple of days later I booted it up again and nothing displays on the DMD, I am using a color DMD which is receiving power just fine from the power driver board. At this point the LED on the DMD controller board was lightly flickering every few seconds. The machine boots, you can start a game and all solenoids/lights/sound are functioning normally.
And here is where it gets weird. I swapped out the dot matrix controller board for a board that I know 100% works and the machine wouldn't fully boot. Same flickering every few seconds but no display and you are not able to start a game and play, I also tried a brand new rottendog board that I was going to put in my AF restoration, this displayed artifacting on the DMD display but the game never fully booted. The first board allows the game to boot, others just leave it hanging.
What I have tried:
1. Reseating all ribbon/pin connectors
2. Examining/voltage testing 2 power driver boards (perfect)
3. Swapping ribbon connectors from another machine
4. Swapping DMD controller boards 2x
And I'm stumped! At this point I'm not even sure what would cause what is happening, any guidance would be greatly appreciated. Thanks for your time!