Quoted from LTG:On flipper coils the diode end is opposite of the coil stop, up by the flipper shaft - to reduce vibration breaking them off.
On things like pop bumpers, slingshots, etc. The lug end goes by the coil stop.
Now if your game is a Williams Indiana Jones, only three lug coils like flippers get diodes. Your other two lug coils don't have diodes on them, the diodes are on the power driver board in the head. On those coils it doesn't matter which side the wire goes on.
Go to the Internet Pinball Database and look at the underside playfield pictures of Williams DMD era games to see how the various coils are mounted.
If you get stuck, post a picture here and people will help.
LTG : )
Now I understand. I think I was not using the correct terms which was leading to my confusion. Where I was saying "diode", I should have been using the term "lug". Your explanation makes sense.
Thanks to all of you on Pinside who have knowledge that you are willing to share that helps newbs like me out. I have only been a member on this site for a few weeks and the community effort to help others is unlike any other forum I have seen.