Found a helpful post on another forum, figured I would post here for future reference for anyone else. I'll work on this tomorrow.
"There are way too many connectors in the design of the Data East GI Circuitry, and as a result, the reliability of the whole GI circuit is rather bad, as you well know at this time.
The best way to fix the GI lights is to systematically go through the entire system from the transformer to the light bulbs and replace any and all connectors, fuses, and bulbs that are bad.
First start at the transformer in the bottom of the cabinet. There should be a connector with four large yellow wires on it. Make sure that you are reading 6-7 VAC at that connector and that that connector is in good condition (not discolored and brittle). Now move to the connector that will be in the upper right of the power supply, typically this connector is on a "pig-tail" of 4 yellow and yellow-white wires that have a connector at one end and are soldered to the power supply on the other (CN9). Measure the voltage of the GI power at this point, you should be getting the SAME voltage (within 0.1 volt or so) as the previous measurement, if you are not, then there is an issue with this connector or the previous connector, replace BOTH SIDES of the connector. The next link in this chain is the relay on the power board. You should be able to test this in the Diagnostics menu, if not, during attract mode this relay is "on" and the voltage at the output of this relay should be the same (within 0.1 volt or so) as the previous measurements. Next in the chain is a 9 pin in-line connector (CN8), this one has, brown, yellow, purple and green wires on it. Replace BOTH the connector on the board and the connector on the wires, if you only replace one, you are not fixing the problems that you have. This connector typically gets very hot and will fail over time. The next connector is on the PPB Board, this is the J5 connector, replace both it on the board and the mating connector on the wires. Then on the PPB Board, replace the fuse holders for F1, F2, F3, and F4, and put new fuses in them. These fuse holders were very poor and will often crack and cause contact to be lost to the fuses. There is one last connector in this string, and it is in the cable harness to the backbox. I have yet to see an issue with the backbox connector, but you will want to look at it if the backbox lights are not working. At this point the voltage that you should read at the bulbs should be almost the same as the one that you measured at the power supply CN8.
Now that all of the connections and fuses are new, the GI should be shining so brightly that it blinds you, provided that you have good bulbs in the system.
I am sorry if this is a little long-winded, but after having to do this to EVERY data East machine that I have owned, I have come to the conclusion that the only way to make the Data East GI circuit bullet-proof, is to shotgun the whole thing. At the very minimum I replace CN8 (both sides), J5 (both sides), and all the fuse holders on the PPB in the GI system. Once this is done, it will last the rest of the life of the pinball machine in home use."