Hello Pinside Folks!
I'll try to keep this basic. Been rebuilding parts of my JP and recently the right lower flipper was getting twitchy and intermittent. Figured I might as well replace the coil, it looked old and unwound a bit. Throw the new coil on and it blew up the flipper board. Ended up replacing R4 (toast) and R3 and D1 which were "blackened". Without the right coil in I plugged it all back in and it works. I did find that either a fuse was blown already (or blew in this process) and that several of the fuses on the flipper board were the wrong rating. I replaced them all with new 3A slo-blo and fuse F1 blows as soon as the game powers up.
I did find the info here: http://www.pinrepair.com/de/index3.htm#factory about the wire shorting on the upper right flipper. I did a cursory search and didn't see anything wrong. Any troubleshooting steps I can take to track down the issue? Now I am assuming the coil was not really bad or going bad but maybe a short is what caused the flipper issues and is what is blowing the fuse now?
Any help is appreciated!