Building an entire pinball machine from a blank piece of paper is an enormous project, you might want to take an existing machine and modify the playfield, I'm assuming that's what you intend to do, buy a 300-400 dollar machine and build your playfield out of a slab of 3/4 inch plywood, drill and mount everything, its actually going to take you hundreds of hours, but I am not going to discourage you from your dream, do it, but please, for gosh sakes, buy two or three pinball machines and dissect them and study them before you undertake this. MPU issues are another can of worms for a custom machine.
Its kind of like saying you want to do some serious bondage and leather games with a chick when you haven't even been to first base.
Now, let me stop saying mean things to the newbie and think about this one, because I have thought about this one myself, actually.
You could use a 199 dollar Ultimate MPU and pick one of the factory settings for the hundred or so machines stored on it that was the closest thing to the playfield of the virtual pin you like, namely the same number of pop bumpers, drop targets and slingshots, then wire the whole thing up.
would still take you hundreds of hours...
but other than a custom MPU, I don't see any way to do it without starting your own custom pinball machine company, which might be kinda cool.
Which brings me to another point.
If you are gonna go to this much trouble, why not design the entire playfield, you can using Visual Pinball, place the slingshots and drops and flippers wherever you want, create a table that plays well in the virtual world that's not too complex, then build the real thing, totally worth doing, because you designed every bit of it. And why not, if you are going to go to the trouble why not make it one hundred percent your design and build.
Welcome, new friend, I want to see you build a machine.