While you are waiting for your caps, you can do a little visual inspection. Remove the boards and look at the back of the connectors. You are looking for cracks in the solder around the header pins. (It is easier with a magnifying glass, but most of the time you can see it with your eyes.)
If you see issues like this, it is best to "reflow" the solder. Taking a soldering iron heat the solder and pin enough to get the solder liquid, then add a little new lead solder. Make sure you don't heat it too much because you might loosen the pins. (There are many who suggest removing the old solder and then adding new, but that is really a pain, and I've had very good luck with just adding new solder. Remember to use lead solder because it is the same type as this machine.)
While this may not be the immediate problem, cold solder joints have accounted for more flaky issues than I can count. When we fixed up our FP2, we played it for 3 months without any problems, then it slowly started degrading. After reflowing the solder, the machine has been 100% for the last year.