Its doing something. I'm just not sure what. I've been looking at the coding on Spy Hunter. When disassembled, there are 3 areas of code in the game ROM that call the setting for audit 20.
So, for example, audits 16-19 are stored in battery backed RAM at $2FA-$2FD. Audit 20 (the undocumented one) is stored at $2FE. When I search the code for $02FE, I get 3 hits...all in the game ROM, and they are fairly large routines.
1258: 4F clra
1259: B7 02 14 sta $0214
125C: B6 02 0A lda $020A
125F: 8A 40 ora #$40
1261: B7 02 0A sta $020A
1264: B6 02 FE lda $02FE <<<<<<<<<<<<<<<<<<<<<<<<
1267: 84 F0 anda #$F0
1269: 27 05 beq $1270
126B: 86 12 lda #$12
126D: BD 55 7C jsr $557C
1270: B6 02 17 lda $0217
1273: 8A 10 ora #$10
1275: CE 12 BF ldx #$12BF
1278: 08 inx
1279: 08 inx
127A: 48 asla
127B: 24 FB bcc $1278
127D: EE 00 ldx (x+$00)
127F: 6E 00 jmp (x+$00)
1281: BD 11 8C jsr $118C
1284: C6 20 ldb #$20
1286: 20 24 bra $12AC
1288: BD 11 9C jsr $119C
128B: C6 40 ldb #$40
128D: 96 4E lda $4E
128F: 85 08 bita #$08
1291: 26 02 bne $1295
1293: C6 C0 ldb #$C0
1295: 20 15 bra $12AC
1297: BD 51 55 jsr $5155
129A: 96 4E lda $4E
129C: 8A 08 ora #$08
129E: 97 4E sta $4E
12A0: BD 11 D7 jsr $11D7
12A3: C6 40 ldb #$40
12A5: 20 05 bra $12AC
12A7: BD 11 D7 jsr $11D7
12AA: C6 40 ldb #$40
12AC: F7 02 17 stb $0217
12AF: CE 02 00 ldx #$0200
12B2: C6 FF ldb #$FF
12B4: E7 11 stb (x+$11)
12B6: 96 51 lda $51
12B8: 43 coma
12B9: A7 06 sta (x+$06)
12BB: BD 10 7B jsr $107B
12BE: A7 05 sta (x+$05)
12C0: 39 rts
...........................................
13DF: 84 E0 anda #$E0
13E1: 26 A2 bne $1385
13E3: BD 11 1B jsr $111B
13E6: B6 02 FE lda $02FE <<<<<<<<<<<<<<<<<<<<<<<<<
13E9: 84 F0 anda #$F0
13EB: 27 05 beq $13F2
13ED: 86 12 lda #$12
13EF: BD 55 7C jsr $557C
13F2: BD 14 89 jsr $1489
13F5: CE 02 00 ldx #$0200
13F8: B6 02 12 lda $0212
13FB: 85 10 bita #$10
13FD: 27 32 beq $1431
13FF: 4F clra
1400: B7 02 12 sta $0212
1403: 86 FF lda #$FF
1405: A7 01 sta (x+$01)
1407: A7 02 sta (x+$02)
1409: 86 EF lda #$EF
140B: A7 00 sta (x+$00)
140D: BD 51 55 jsr $5155
1410: BD 11 94 jsr $1194
1413: 96 47 lda $47
1415: 2B 09 bmi $1420
1417: 96 4E lda $4E
1419: 8A 04 ora #$04
141B: 97 4E sta $4E
141D: 7E 14 79 jmp $1479
...............................................
566B: C5 10 bitb #$10
566D: 27 C5 beq $5634
566F: D6 0B ldb $0B
5671: C4 F0 andb #$F0
5673: C1 10 cmpb #$10
5675: 26 BD bne $5634
5677: F6 02 FE ldb $02FE <<<<<<<<<<<<<<<<<<<<<<<<<
567A: C4 F0 andb #$F0
567C: 27 B6 beq $5634
567E: 86 12 lda #$12
5680: BD 55 7C jsr $557C
5683: 20 AF bra $5634
5685: 39 rts