Have you made any progress with this?
Do you have a device to measure frequency?
In terms of the attract mode slowness, make sure the following signals are in spec:
Pin 18 of U10 should have a 120Hz signal (Zero Crossing Interrupt)
Pin 40 of U11 should have a 317Hz - 320Hz signal (Display Interrupt)
It's unlikely but possible that the solenoid Q9 transistor repeatedly activating could be related to the slowness issue you've got with timers being out of whack.
What game are you testing it in?
Have you tried another 6800 CPU at U9?