Glad to see you moved your questions here.
Th inserts need to be leveled and then glued. To change the score for replay, there is a connector on the bottom of the playfield for adjustments. The number of games per quarter adjustment is by the fuses. You will see connectors there, along with ball per game. Hopefully you have the connector cards on the sides of the cabinet when you open the coin door.
Check you switch alignment on the score reels and the one that is sticking, may need cleaned.
The pop bumper and extra ball would need some research in the schematic. I would make sure all your Jones plugs are clean and seated all the way before you start adjusting switch blades. They plug in under the playfield in the back of the relay board.