Have you checked the high voltage with a meter to see what it's reading? If the new power supply follows the original with test point identification, it'd be TP2 you'd want to check on DC voltage. Exercise caution of course, since it's high voltage. And on that note, unplug the displays to avoid any additional damage to them while you're testing the power supply.
Power Supply Test Points.
With the game's power on check the power supply test points:
TP10 = ground (bottom left corner)
TP1 = +5 volts DC (top right corner)
TP2 = 170-190 volts DC (high voltage out, middle of board, adjustable via trim pot VR1)
TP3 = 230 volts DC (high voltage in, middle of board)
TP4 = 43 volts DC (solenoid voltage, top left).
TP5 = 14 volts DC (main logic power before regulation, middle of board)
TP6 & TP7 = 11 volts AC (lamp matrix)
TP8 & TP9 = 6.3 volts AC (General illumination)
Source: http://www.pinrepair.com/6803/#displays
It's not sounding too good with a crackle pop and dead displays AFTER they were working. Did they go super nova (light up almost pink) and then disappear? I don't see really dark segments, so they *could* be okay.. but it really seems to indicate there was a short somewhere or higher voltage into a component. You could pull one or both displays to see if you can find out what went crackle/pop. Usually if you hear it, you can SEE it too.. burnt mark on the board, cracked transistor or an IC that has a hole burnt through the middle.